A similarity matrix uses boxes with different colors or patterns in them to show similarity. It is similar to a multiplication table where you take the numbers on the axis of the graph and follow the row until they meet and that is the answer. On this graph you take the number on the x and y axis and follow till they meet and it shows how similar the strain is. For example, take 10 on the y axis and 5 on the x axis and it says that they have 70-79 percent similarity.http://www.jbaas.com/articles/vol_2_n2_c7.php
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